Today, as hundreds of genomes have been sequenced and thousands of proteins and more than ten thousand metabolites have been identi?ed, navigating safely through this wealth of information without getting completely lost has become crucial for research in, and teaching of, molecular biology. Consequently, a considerable number of tools have been developed and put on the market in the last two decades that describe the multitude of potential/putative interactions between genes, proteins, metabolites, and other biologically relevant compounds in terms of metabolic, genetic, signaling, and other networks, their aim being to support all sorts of explorations through bio-data bases currently called Systems Biology. As a result, navigating safely through this wealth of information-processing tools has become equally crucial for successful work in molecular biology. To help perform such navigation tasks successfully, this book starts by providing an extremely useful overview of existing tools for ?nding (or designing) and inv- tigating metabolic, genetic, signaling, and other network databases, addressing also user-relevant practical questions like • Is the database viewable through a web browser? • Is there a licensing fee? • What is the data type (metabolic, gene regulatory, signaling, etc. )? • Is the database developed/maintained by a curator or a computer? • Is there any software for editing pathways? • Is it possible to simulate the pathway? It then goes on to introduce a speci?c such tool, that is, the fabulous “Cell - lustrator 3. 0” tool developed by the authors.
This chapter describes the computational methods for estimating, modeling, and simulating biological systems. It also presents two approaches to understand biological systems and describes a method and a software tool developed by our research group. Bayesian network is a mathematical model for representing causal relationships among random variables by using conditional probabilities. The conditional probabilities describe the parent-child relationships and can be viewed as an extension of the deterministic models like Boolean networks. This model is suited for modeling qualitative relations between genes and allows mathematical and algorithmic analyses. We also devised a method to infer a gene network in terms of a linear system of differential equations from time-course gene expression data. A software tool is developed based on Petri net to modeling and simulation of gene networks. With this software tool, various models have been constructed and its utility has been demonstrated in practice.
This is an advanced textbook for graduate students and researchers wishing to learn about high temperature superconductivity in copper oxides, in particular the Kamimura-Suwa (K-S) model. Because a number of models have been proposed since the discovery of high temperature superconductivity by Bednorz and Müller in 1986, the book first explains briefly the historical development that led to the K-S model. It then focuses on the physical background necessary to understand the K-S model and on the basic principles behind various physical phenomena such as electronic structures, electrical, thermal and optical properties, and the mechanism of high temperature superconductivity.
Today, as hundreds of genomes have been sequenced and thousands of proteins and more than ten thousand metabolites have been identi?ed, navigating safely through this wealth of information without getting completely lost has become crucial for research in, and teaching of, molecular biology. Consequently, a considerable number of tools have been developed and put on the market in the last two decades that describe the multitude of potential/putative interactions between genes, proteins, metabolites, and other biologically relevant compounds in terms of metabolic, genetic, signaling, and other networks, their aim being to support all sorts of explorations through bio-data bases currently called Systems Biology. As a result, navigating safely through this wealth of information-processing tools has become equally crucial for successful work in molecular biology. To help perform such navigation tasks successfully, this book starts by providing an extremely useful overview of existing tools for ?nding (or designing) and inv- tigating metabolic, genetic, signaling, and other network databases, addressing also user-relevant practical questions like • Is the database viewable through a web browser? • Is there a licensing fee? • What is the data type (metabolic, gene regulatory, signaling, etc. )? • Is the database developed/maintained by a curator or a computer? • Is there any software for editing pathways? • Is it possible to simulate the pathway? It then goes on to introduce a speci?c such tool, that is, the fabulous “Cell - lustrator 3. 0” tool developed by the authors.
This chapter describes the computational methods for estimating, modeling, and simulating biological systems. It also presents two approaches to understand biological systems and describes a method and a software tool developed by our research group. Bayesian network is a mathematical model for representing causal relationships among random variables by using conditional probabilities. The conditional probabilities describe the parent-child relationships and can be viewed as an extension of the deterministic models like Boolean networks. This model is suited for modeling qualitative relations between genes and allows mathematical and algorithmic analyses. We also devised a method to infer a gene network in terms of a linear system of differential equations from time-course gene expression data. A software tool is developed based on Petri net to modeling and simulation of gene networks. With this software tool, various models have been constructed and its utility has been demonstrated in practice.
This is an advanced textbook for graduate students and researchers wishing to learn about high temperature superconductivity in copper oxides, in particular the Kamimura-Suwa (K-S) model. Because a number of models have been proposed since the discovery of high temperature superconductivity by Bednorz and Müller in 1986, the book first explains briefly the historical development that led to the K-S model. It then focuses on the physical background necessary to understand the K-S model and on the basic principles behind various physical phenomena such as electronic structures, electrical, thermal and optical properties, and the mechanism of high temperature superconductivity.
This comprehensive, authoritative treatise covers all aspects of mucosal vaccines including their development, mechanisms of action, molecular/cellular aspects, and practical applications. The contributing authors and editors of this one-of-a-kind book are very well known in their respective fields. Mucosal Vaccines is organized in a unique format in which basic, clinical, and practical aspects of the mucosal immune system for vaccine development are described and discussed. This project is endorsed by the Society for Mucosal Immunology. Provides the latest views on mucosal vaccines Applies basic principles to the development of new vaccines Links basic, clinical, and practical aspects of mucosal vaccines to different infectious diseases Unique and user-friendly organization
This volume contains the proceedings of the 8th Epioptics Workshop, held at the Ettore Majorana Foundation and Centre for Scientific Culture, Erice, Sicily. The book assesses the capabilities of state-of-the-art optical techniques in elucidating the fundamental electronic and structural properties of semiconductor and metal surfaces, interfaces, thin layers, and layer structures. The contributions consider the usefulness of these techniques for optimization of high quality multilayer samples through feedback control during materials growth and processing. Particular emphasis is placed on the theory of non-linear optics and on dynamical processes through the use of pump-probe techniques together with the search for new optical sources. Some new applications of Scanning Near-field Optical Microscopy to material science and biological samples, dried and in vivo, with the use of different laser sources are also included.
The Constitution of Japan has served the country for more than half a century, creating and maintaining a stable and functional democratic system. This book innovatively interprets Japanese politics as a ’benign elite democracy’ whilst demonstrating the Supreme Court's vital contribution to the political structure. In The Supreme Court and Benign Elite Democracy in Japan, Hiroshi Itoh presents the first empirical study of judicial decision making under Japan's Constitution. He examines the Supreme Court’s records regarding the protection of civil rights and liberties, the preservation of the conformity of lower levels of laws and regulations to the Constitution, and the maintenance of the Court's relationships to the political branches. The analysis of these three aspects of constitutional litigation reveal how the Supreme Court contributes to the efficacy of constitutional democracy by keeping the system adaptable to the ever-changing environment in and around Japan.
This book describes the emergent endohedral metallofullerene, lithium-containing fullerene Li@C60, with an overview from its history to recent application research. The book covers synthesis, preparation, purification, structure, physical and chemical properties, derivatization, computational theoretical studies, and device application of Li@C60. Readers can learn cutting-edge nanotechnology of this exotic nanocarbon material, which is expected to deliver future solutions in clean energy and bio devices. This work is by a researcher who has long experience in carbon nanomaterials—more than 15 years with his contributing coworkers. The level of the book is appropriate for graduate students, post-docs researchers, and young faculty members who are interested in nanomaterials from the point of view of chemistry and physics.
For long-span bridges, wind action is a dominant factor in their safety and serviceability. A large number of long-span bridges have been built in Japan over the past 30 years, and tremendous amounts of research and technical development have been accomplished in wind-resistant design. This book is a compilation of the results of active research and development. Wind-resistant design standards generated in Japan are described in the first few chapters. Then comes information such as design wind speed, structural damping, wind tunnel tests, and analyses, which provide the basis of the design standards. Wind-induced vibrations and their control of girders, towers, cables, and other features are explained with examples of field measurements. Comprehensive listings of Japanese experience in vibration control are also presented. Because achieving particularly dynamic safety against wind is still not an easy task, these data and information will be valuable assets for the wind-engineering and bridge-engineering communities.
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